Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi.
Identifieur interne : 000076 ( Main/Exploration ); précédent : 000075; suivant : 000077Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi.
Auteurs : Aïda Azaiez [Canada] ; Brian Boyle ; Valérie Levée ; Armand SéguinSource :
- Molecular plant-microbe interactions : MPMI [ 0894-0282 ] ; 2009.
Descripteurs français
- KwdFr :
- Analyse de profil d'expression de gènes (MeSH), Anti-infectieux (métabolisme), Basidiomycota (physiologie), Chimère (métabolisme), Clones cellulaires (MeSH), Feuilles de plante (génétique), Feuilles de plante (microbiologie), Gènes de plante (MeSH), Maladies des plantes (génétique), Maladies des plantes (microbiologie), Paroi cellulaire (génétique), Populus (génétique), Populus (microbiologie), Populus (métabolisme), Reproductibilité des résultats (MeSH), Réaction de polymérisation en chaîne (MeSH), Régulation de l'expression des gènes végétaux (MeSH), Séquençage par oligonucléotides en batterie (MeSH), Transduction du signal (MeSH), Transporteurs ABC (métabolisme).
- MESH :
- génétique : Feuilles de plante, Maladies des plantes, Paroi cellulaire, Populus.
- microbiologie : Feuilles de plante, Maladies des plantes, Populus.
- métabolisme : Anti-infectieux, Chimère, Populus, Transporteurs ABC.
- physiologie : Basidiomycota.
- Analyse de profil d'expression de gènes, Clones cellulaires, Gènes de plante, Reproductibilité des résultats, Réaction de polymérisation en chaîne, Régulation de l'expression des gènes végétaux, Séquençage par oligonucléotides en batterie, Transduction du signal.
English descriptors
- KwdEn :
- ATP-Binding Cassette Transporters (metabolism), Anti-Infective Agents (metabolism), Basidiomycota (physiology), Cell Wall (genetics), Chimera (metabolism), Clone Cells (MeSH), Gene Expression Profiling (MeSH), Gene Expression Regulation, Plant (MeSH), Genes, Plant (MeSH), Oligonucleotide Array Sequence Analysis (MeSH), Plant Diseases (genetics), Plant Diseases (microbiology), Plant Leaves (genetics), Plant Leaves (microbiology), Polymerase Chain Reaction (MeSH), Populus (genetics), Populus (metabolism), Populus (microbiology), Reproducibility of Results (MeSH), Signal Transduction (MeSH).
- MESH :
- chemical , metabolism : ATP-Binding Cassette Transporters, Anti-Infective Agents.
- genetics : Cell Wall, Plant Diseases, Plant Leaves, Populus.
- metabolism : Chimera, Populus.
- microbiology : Plant Diseases, Plant Leaves, Populus.
- physiology : Basidiomycota.
- Clone Cells, Gene Expression Profiling, Gene Expression Regulation, Plant, Genes, Plant, Oligonucleotide Array Sequence Analysis, Polymerase Chain Reaction, Reproducibility of Results, Signal Transduction.
Abstract
In natural conditions, plants are subjected to a combination of biotic stresses and often have to cope with simultaneous pathogen infections. In this report, we aim to understand the global transcriptional response of hybrid poplar NM6 (Populus nigra x P. maximowiczii) to infection by two biotrophic Melampsora fungi, Melampsora larici-populina and M. medusae f. sp. deltoidae. These pathogens triggered different responses after inoculation of poplar leaves. Transcript profiling using the GeneChip Poplar Genome Array revealed a total of 416 differentially expressed transcripts whose expression level was > or = twofold relative to controls. Interestingly, approximately half of the differentially expressed genes in infected leaves showed altered expression following interaction with either of the Melampsora spp. We also infected poplar leaves simultaneously with both Melampsora spp. to investigate potential interaction between the responses to the individual pathogens during a mixed infection. For this mixed inoculation, the number of differentially expressed transcripts increased to 648 and our analysis showed that infection with both fungi also induced a common set of genes. The genes induced after Melampsora spp. infection were mainly related to primary and secondary metabolic processes, cell-wall reinforcement and lignification, defense and stress-related mechanisms, and signal perception and transduction.
DOI: 10.1094/MPMI-22-2-0190
PubMed: 19132871
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi.</title><author><name sortKey="Azaiez, Aida" sort="Azaiez, Aida" uniqKey="Azaiez A" first="Aïda" last="Azaiez">Aïda Azaiez</name><affiliation wicri:level="1"><nlm:affiliation>Natural Resources Canada, Canadien Forest Service, Laurentian Forestry Centre, Sainte-Foy, Quebec, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Canadien Forest Service, Laurentian Forestry Centre, Sainte-Foy, Quebec</wicri:regionArea><wicri:noRegion>Quebec</wicri:noRegion></affiliation></author><author><name sortKey="Boyle, Brian" sort="Boyle, Brian" uniqKey="Boyle B" first="Brian" last="Boyle">Brian Boyle</name></author><author><name sortKey="Levee, Valerie" sort="Levee, Valerie" uniqKey="Levee V" first="Valérie" last="Levée">Valérie Levée</name></author><author><name sortKey="Seguin, Armand" sort="Seguin, Armand" uniqKey="Seguin A" first="Armand" last="Séguin">Armand Séguin</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2009">2009</date><idno type="RBID">pubmed:19132871</idno><idno type="pmid">19132871</idno><idno type="doi">10.1094/MPMI-22-2-0190</idno><idno type="wicri:Area/Main/Corpus">000077</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Corpus" wicri:corpus="PubMed">000077</idno><idno type="wicri:Area/Main/Curation">000077</idno><idno type="wicri:explorRef" wicri:stream="Main" wicri:step="Curation">000077</idno><idno type="wicri:Area/Main/Exploration">000077</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi.</title><author><name sortKey="Azaiez, Aida" sort="Azaiez, Aida" uniqKey="Azaiez A" first="Aïda" last="Azaiez">Aïda Azaiez</name><affiliation wicri:level="1"><nlm:affiliation>Natural Resources Canada, Canadien Forest Service, Laurentian Forestry Centre, Sainte-Foy, Quebec, Canada.</nlm:affiliation><country xml:lang="fr">Canada</country><wicri:regionArea>Natural Resources Canada, Canadien Forest Service, Laurentian Forestry Centre, Sainte-Foy, Quebec</wicri:regionArea><wicri:noRegion>Quebec</wicri:noRegion></affiliation></author><author><name sortKey="Boyle, Brian" sort="Boyle, Brian" uniqKey="Boyle B" first="Brian" last="Boyle">Brian Boyle</name></author><author><name sortKey="Levee, Valerie" sort="Levee, Valerie" uniqKey="Levee V" first="Valérie" last="Levée">Valérie Levée</name></author><author><name sortKey="Seguin, Armand" sort="Seguin, Armand" uniqKey="Seguin A" first="Armand" last="Séguin">Armand Séguin</name></author></analytic><series><title level="j">Molecular plant-microbe interactions : MPMI</title><idno type="ISSN">0894-0282</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>ATP-Binding Cassette Transporters (metabolism)</term><term>Anti-Infective Agents (metabolism)</term><term>Basidiomycota (physiology)</term><term>Cell Wall (genetics)</term><term>Chimera (metabolism)</term><term>Clone Cells (MeSH)</term><term>Gene Expression Profiling (MeSH)</term><term>Gene Expression Regulation, Plant (MeSH)</term><term>Genes, Plant (MeSH)</term><term>Oligonucleotide Array Sequence Analysis (MeSH)</term><term>Plant Diseases (genetics)</term><term>Plant Diseases (microbiology)</term><term>Plant Leaves (genetics)</term><term>Plant Leaves (microbiology)</term><term>Polymerase Chain Reaction (MeSH)</term><term>Populus (genetics)</term><term>Populus (metabolism)</term><term>Populus (microbiology)</term><term>Reproducibility of Results (MeSH)</term><term>Signal Transduction (MeSH)</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>Analyse de profil d'expression de gènes (MeSH)</term><term>Anti-infectieux (métabolisme)</term><term>Basidiomycota (physiologie)</term><term>Chimère (métabolisme)</term><term>Clones cellulaires (MeSH)</term><term>Feuilles de plante (génétique)</term><term>Feuilles de plante (microbiologie)</term><term>Gènes de plante (MeSH)</term><term>Maladies des plantes (génétique)</term><term>Maladies des plantes (microbiologie)</term><term>Paroi cellulaire (génétique)</term><term>Populus (génétique)</term><term>Populus (microbiologie)</term><term>Populus (métabolisme)</term><term>Reproductibilité des résultats (MeSH)</term><term>Réaction de polymérisation en chaîne (MeSH)</term><term>Régulation de l'expression des gènes végétaux (MeSH)</term><term>Séquençage par oligonucléotides en batterie (MeSH)</term><term>Transduction du signal (MeSH)</term><term>Transporteurs ABC (métabolisme)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>ATP-Binding Cassette Transporters</term><term>Anti-Infective Agents</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Cell Wall</term><term>Plant Diseases</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Feuilles de plante</term><term>Maladies des plantes</term><term>Paroi cellulaire</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="metabolism" xml:lang="en"><term>Chimera</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiologie" xml:lang="fr"><term>Feuilles de plante</term><term>Maladies des plantes</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="microbiology" xml:lang="en"><term>Plant Diseases</term><term>Plant Leaves</term><term>Populus</term></keywords><keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Anti-infectieux</term><term>Chimère</term><term>Populus</term><term>Transporteurs ABC</term></keywords><keywords scheme="MESH" qualifier="physiologie" xml:lang="fr"><term>Basidiomycota</term></keywords><keywords scheme="MESH" qualifier="physiology" xml:lang="en"><term>Basidiomycota</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Clone Cells</term><term>Gene Expression Profiling</term><term>Gene Expression Regulation, Plant</term><term>Genes, Plant</term><term>Oligonucleotide Array Sequence Analysis</term><term>Polymerase Chain Reaction</term><term>Reproducibility of Results</term><term>Signal Transduction</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de profil d'expression de gènes</term><term>Clones cellulaires</term><term>Gènes de plante</term><term>Reproductibilité des résultats</term><term>Réaction de polymérisation en chaîne</term><term>Régulation de l'expression des gènes végétaux</term><term>Séquençage par oligonucléotides en batterie</term><term>Transduction du signal</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">In natural conditions, plants are subjected to a combination of biotic stresses and often have to cope with simultaneous pathogen infections. In this report, we aim to understand the global transcriptional response of hybrid poplar NM6 (Populus nigra x P. maximowiczii) to infection by two biotrophic Melampsora fungi, Melampsora larici-populina and M. medusae f. sp. deltoidae. These pathogens triggered different responses after inoculation of poplar leaves. Transcript profiling using the GeneChip Poplar Genome Array revealed a total of 416 differentially expressed transcripts whose expression level was > or = twofold relative to controls. Interestingly, approximately half of the differentially expressed genes in infected leaves showed altered expression following interaction with either of the Melampsora spp. We also infected poplar leaves simultaneously with both Melampsora spp. to investigate potential interaction between the responses to the individual pathogens during a mixed infection. For this mixed inoculation, the number of differentially expressed transcripts increased to 648 and our analysis showed that infection with both fungi also induced a common set of genes. The genes induced after Melampsora spp. infection were mainly related to primary and secondary metabolic processes, cell-wall reinforcement and lignification, defense and stress-related mechanisms, and signal perception and transduction.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">19132871</PMID><DateCompleted><Year>2009</Year><Month>05</Month><Day>27</Day></DateCompleted><DateRevised><Year>2017</Year><Month>12</Month><Day>13</Day></DateRevised><Article PubModel="Print"><Journal><ISSN IssnType="Print">0894-0282</ISSN><JournalIssue CitedMedium="Print"><Volume>22</Volume><Issue>2</Issue><PubDate><Year>2009</Year><Month>Feb</Month></PubDate></JournalIssue><Title>Molecular plant-microbe interactions : MPMI</Title><ISOAbbreviation>Mol Plant Microbe Interact</ISOAbbreviation></Journal><ArticleTitle>Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi.</ArticleTitle><Pagination><MedlinePgn>190-200</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1094/MPMI-22-2-0190</ELocationID><Abstract><AbstractText>In natural conditions, plants are subjected to a combination of biotic stresses and often have to cope with simultaneous pathogen infections. In this report, we aim to understand the global transcriptional response of hybrid poplar NM6 (Populus nigra x P. maximowiczii) to infection by two biotrophic Melampsora fungi, Melampsora larici-populina and M. medusae f. sp. deltoidae. These pathogens triggered different responses after inoculation of poplar leaves. Transcript profiling using the GeneChip Poplar Genome Array revealed a total of 416 differentially expressed transcripts whose expression level was > or = twofold relative to controls. Interestingly, approximately half of the differentially expressed genes in infected leaves showed altered expression following interaction with either of the Melampsora spp. We also infected poplar leaves simultaneously with both Melampsora spp. to investigate potential interaction between the responses to the individual pathogens during a mixed infection. For this mixed inoculation, the number of differentially expressed transcripts increased to 648 and our analysis showed that infection with both fungi also induced a common set of genes. The genes induced after Melampsora spp. infection were mainly related to primary and secondary metabolic processes, cell-wall reinforcement and lignification, defense and stress-related mechanisms, and signal perception and transduction.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Azaiez</LastName><ForeName>Aïda</ForeName><Initials>A</Initials><AffiliationInfo><Affiliation>Natural Resources Canada, Canadien Forest Service, Laurentian Forestry Centre, Sainte-Foy, Quebec, Canada.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Boyle</LastName><ForeName>Brian</ForeName><Initials>B</Initials></Author><Author ValidYN="Y"><LastName>Levée</LastName><ForeName>Valérie</ForeName><Initials>V</Initials></Author><Author ValidYN="Y"><LastName>Séguin</LastName><ForeName>Armand</ForeName><Initials>A</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Mol Plant Microbe Interact</MedlineTA><NlmUniqueID>9107902</NlmUniqueID><ISSNLinking>0894-0282</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D018528">ATP-Binding Cassette Transporters</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D000890">Anti-Infective Agents</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D018528" MajorTopicYN="N">ATP-Binding Cassette Transporters</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D000890" MajorTopicYN="N">Anti-Infective Agents</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001487" MajorTopicYN="N">Basidiomycota</DescriptorName><QualifierName UI="Q000502" MajorTopicYN="Y">physiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002473" MajorTopicYN="N">Cell Wall</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002678" MajorTopicYN="N">Chimera</DescriptorName><QualifierName UI="Q000378" MajorTopicYN="Y">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D002999" MajorTopicYN="N">Clone Cells</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020869" MajorTopicYN="Y">Gene Expression Profiling</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D018506" MajorTopicYN="N">Gene Expression Regulation, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017343" MajorTopicYN="N">Genes, Plant</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D020411" MajorTopicYN="N">Oligonucleotide Array Sequence Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010935" MajorTopicYN="N">Plant Diseases</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D018515" MajorTopicYN="N">Plant Leaves</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000382" MajorTopicYN="N">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D016133" MajorTopicYN="N">Polymerase Chain Reaction</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName><QualifierName UI="Q000382" MajorTopicYN="Y">microbiology</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D015203" MajorTopicYN="N">Reproducibility of Results</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D015398" MajorTopicYN="N">Signal Transduction</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2009</Year><Month>1</Month><Day>10</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="pubmed"><Year>2009</Year><Month>1</Month><Day>10</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate PubStatus="medline"><Year>2009</Year><Month>5</Month><Day>28</Day><Hour>9</Hour><Minute>0</Minute></PubMedPubDate></History><PublicationStatus>ppublish</PublicationStatus><ArticleIdList><ArticleId IdType="pubmed">19132871</ArticleId><ArticleId IdType="doi">10.1094/MPMI-22-2-0190</ArticleId></ArticleIdList></PubmedData></pubmed><affiliations><list><country><li>Canada</li></country></list><tree><noCountry><name sortKey="Boyle, Brian" sort="Boyle, Brian" uniqKey="Boyle B" first="Brian" last="Boyle">Brian Boyle</name><name sortKey="Levee, Valerie" sort="Levee, Valerie" uniqKey="Levee V" first="Valérie" last="Levée">Valérie Levée</name><name sortKey="Seguin, Armand" sort="Seguin, Armand" uniqKey="Seguin A" first="Armand" last="Séguin">Armand Séguin</name></noCountry><country name="Canada"><noRegion><name sortKey="Azaiez, Aida" sort="Azaiez, Aida" uniqKey="Azaiez A" first="Aïda" last="Azaiez">Aïda Azaiez</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Bois/explor/PoplarRustV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000076 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 000076 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Bois
|area= PoplarRustV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:19132871
|texte= Transcriptome profiling in hybrid poplar following interactions with Melampsora rust fungi.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:19132871" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a PoplarRustV1
| This area was generated with Dilib version V0.6.37. |  |